Therapeutic Insights from Red Soil Actinomycetes: Purification and Metabolite Analysis | InformativeBD

Purification and analysis of secondary metabolites from actinomycetes isolated from red soil: Insights into their therapeutic application

A. Amrin,  M. Muthuselvam, and Radha Palaniswamy, from the different institute of India. wrote a Reseach Article about, Therapeutic Insights from Red Soil Actinomycetes: Purification and Metabolite Analysis. Entitled, Purification and analysis of secondary metabolites from actinomycetes isolated from red soil: Insights into their therapeutic application. This research paper published by the International journal of Microbiology and Mycology (IJMM). an open access scholarly research journal on Mycology. under the affiliation of the International Network For Natural Sciences| INNSpub. an open access multidisciplinary research journal publisher.

Abstract

Actinomycetes isolated from soil can produce diverse secondary metabolites with valuable therapeutic applications. This study aimed to isolate actinomycetes from red soil and evaluate their antibacterial, antioxidant, and biofilm-forming potential. Selected isolates exhibited significant antibacterial activity against Gram-positive bacteria in agar well diffusion assays. Further chemical characterization of their secondary metabolites using spectroscopic techniques confirmed the presence of functional groups responsible for their bioactivity. Antioxidant activity was assessed using free radical scavenging assays, revealing strong antioxidant capacity. Additionally, the isolates demonstrated notable biofilm-forming ability, essential for their survival in harsh environments, and may contribute to antibiotic resistance. These soil-derived actinomycetes’ combined antibacterial and antioxidant properties highlight their potential as sources of natural compounds for pharmaceutical applications. The findings support the need for further studies on these bioactive compounds’ toxicity, formulation, and clinical relevance. This research contributes to the growing interest in natural product discovery and provides promising candidates for developing alternative antimicrobial and antioxidant agents from red soil actinomycetes.

Submit your article to IJMM Journal

Introduction

Actinobacteria are a highly diverse group of Gram-positive bacteria that play a vital ecological role, particularly in soil environments, where they decompose complex organic materials such as lignin and cellulose. Their high GC content is a distinctive genetic trait that enhances their stability and survival in harsh conditions (Jagannathan et al., 2021).

Morphologically, their filamentous, mycelium-like structures resemble those of fungi, allowing them to form extensive networks that facilitate colonization of varied substrates.

These features, combined with their adaptability to a wide range of environments—including acidic, alkaline, and nutrient-deficient soils make them ecologically significant and biotechnologically valuable (Ebency et al., 2024). One of the most studied genera within this group, Streptomyces, is renowned for its production of bioactive secondary metabolites, including antibiotics like streptomycin, tetracycline, and erythromycin. Collectively, actinobacteria produce a range of therapeutically and industrially important compounds such as antifungals, immunosuppressants, and enzymes, making them a major focus in drug discovery and bioremediation research. This study aims to isolate actinomycetes from red soil and investigate their antibacterial, antioxidant, and biofilm-forming potentials. Antimicrobial activity in actinomycetes stems from compounds that interfere with vital bacterial processes, including cell wall formation, protein synthesis, and nucleic acid replication. For example, certain antibiotics inhibit peptidoglycan synthesis, while others block ribosomal function or DNA replication, effectively controlling or eliminating pathogenic bacteria. Some metabolites also target bacterial enzymes, disrupting essential metabolic pathways and contributing to their role in addressing antibiotic resistance. Beyond antimicrobial properties, actinomycetes are known for producing natural antioxidants, such as phenolic acids and flavonoids that neutralize free radicals and reduce oxidative stress, which is implicated in diseases like cancer and neurodegeneration (Nithyalakshmi et al., 2025). These antioxidant compounds are also explored for their potential applications in medicine, food preservation, and environmental sustainability. Additionally, actinobacteria are capable of forming biofilms—structured microbial communities enclosed in an extracellular matrix made of polysaccharides, proteins, and nucleic acids that protect from environmental stressors and antimicrobial agents (Vaijayanthi et al., 2012). While biofilm formation enhances environmental resilience, it also poses a clinical challenge by contributing to persistent infections on medical devices and tissues due to their increased resistance compared to freefloating bacterial cells. Overall, the biochemical diversity and ecological resilience of actinomycetes, particularly those from red soil, highlight their immense potential in the search for novel antimicrobial agents, antioxidants, and strategies to manage biofilm-associated infections.

Reference

Aati S, Aati HY, Hamed AA, El-Shamy S, Aati SH, Abdelmohsen UR, Bahr HS. 2025. Gold nanoparticles synthesized from soil-derived Streptomyces sp. ASM19: Characterization, antimicrobial, anticancer potency, targeted G2/M phase cell-cycle arrest, and in silico studies. RSC Advances 15(5), 3954–3968.

Abdelfattah MS, Elmallah MIY, Hawas UW, Abou El-Kassema LT, Eid MAG. 2016. Isolation and characterization of marine-derived actinomycetes with cytotoxic activity from the Red Sea coast. Asian Pacific Journal of Tropical Biomedicine 6(8), 651–657.

Ahmed M, Khan R, Patel S. 2021. Antimicrobial potential of actinomycetes: Screening and characterization of bioactive compounds. Journal of Microbial Biotechnology 35(2), 112–125.

Anandan R, Dharumadurai D, Manogaran GP. 2016. An introduction to actinobacteria. In: Actinobacteria – Basics and Biotechnological Applications 1, 388.

Azarakhsh Y, Mohammadipanah F, Nassiri SM, Siavashi V, Hamedi J. 2017. Isolation and screening of proangiogenic and antiangiogenic metabolites producing rare actinobacteria from soil. Journal of Applied Microbiology 122(6), 1595–1602.

Babu PM, Panda N, Nayak RK, Sethi D, Biswal S, Mishra MK, Pattanayak SK. 2025. Isolation, characterization, and screening of phosphate (P) solubilizing actinomycetes and exploring their potency in finger millet (Eleusine coracana L.). BMC Plant Biology 25(1), 362.

Baltz RH. 2008. Renaissance in antibacterial discovery from actinomycetes. Current Opinion in Pharmacology 8, 1–7.

Bushell ME. 1993. A method for increasing the success rate of duplicating antibiotic activity in agar and liquid cultures of Streptomyces isolates in new antibiotic screens. Journal of Fermentation and Bioengineering 76(2), 89–93.

Chaudhary HS, Yadav J, Shrivastava AR, Singh S, Singh AK, Gopalan N. 2013. Antibacterial activity of actinomycetes isolated from different soil samples of Sheopur (a city of central India). Journal of Advanced Pharmaceutical Technology Research 4, 118–123.

Christensen GD, Simpson WA, Younger JJ, Baddour LM, Barrett FF, Melton DM, Beachey EH. 1985. Adherence of coagulase-negative staphylococci to plastic tissue culture plates: A quantitative model for the adherence of staphylococci to medical devices. Journal of Clinical Microbiology 22(6), 996–1006.

Das P, Kumar S, Roy A. 2021. Antibacterial potential of Actinomycetes crude extracts against pathogenic bacteria: A comparative study. Journal of Microbial Research 28(2), 112–125.

Deighton MA, Capstick J, Domalewski E, Van Nguyen T. 2001. Methods for studying biofilms produced by Staphylococcus epidermidis. In: Methods in Enzymology 336, 177–195.

Dhaini HK, Khalil MI, El Hajj R. 2025. The antimicrobial potential of Actinomycetes isolated from marine soils in Tyre City Beach, Lebanon: A promising source of novel bioactive metabolites. Applied Microbiology 5(1), 27.

Ebency CIL, Shobana MF, Tharani S, Mano SS, Vanitha N. 2024. Isolation, molecular identification, characterization of Actinomycetes, and study of its antimicrobial and antioxidant activity. Research Journal of Agricultural Science 15(5), 1105–1113.

Egorov NS. 1985. Antibiotic properties of microorganisms cultivated in the laboratory. Antibiotics: A Scientific Approach. Moscow: Mir Publishers, 170–177.

El-Akshar EA, El-Meihy RM, Tewfike TA, Al Husnain L, Alkahtani MD, Bouqellah NA, Abou-Aly HE. 2025. Endophytic chitinase and antifungal metabolites-producing actinobacteria for biological control of cucumber damping off disease. Journal of Plant Pathology 107(1), 469–490.

El-Naggar NEA, El-Shweihy NM, El-Ewasy SM. 2020. Isolation, molecular identification, and screening of Streptomyces isolates with antimicrobial activities. Journal of Genetic Engineering and Biotechnology 18(1), 1–12.

Gallagher W. 2009. FTIR analysis of protein structure. Course Manual, Chem 455, 1–8.

Gupta R, Singh P, Sharma M. 2020. Extraction and characterization of extracellular metabolites from Actinomycetes: A solvent-based approach. Journal of Microbial Biotechnology 22(3), 134–148.

Jagannathan SV, Manemann EM, Rowe SE, Callender MC, Soto W. 2021. Marine Actinomycetes, new sources of biotechnological products. Marine Drugs 19(7), 365.

Jensen PR, Williams PG, Oh DC, Zeigler L, Fenical W. 2007. Species-specific secondary metabolite production in marine Actinomycetes of the genus Salinispora. Applied Environmental Microbiology 73(4), 1146–1152.

Jones RM, Young FW. 2003. Actinomycetes: A rich source of bioactive secondary metabolites. Antimicrobial Agents and Chemotherapy 47(2), 559–566.

Kaur H, Sharma D, Manhas RK. 2021. Molecular characterization and antimicrobial potential of Streptomyces spp. isolated from soil samples. Archives of Microbiology 203(9), 5797–5806.

Kausar H, Sariah M, Mohd Saud H, Zahangir Alam M, Razi Ismail M. 2011. Isolation and screening of potential actinobacteria for rapid composting of rice straw. Biodegradation 22, 367–375.

Keshamo AE, Agena A, Bedewi Z. 2024. Isolation and characterization of antibiotic producing Actinomycetes from soils of Hawassa, Southern Ethiopia. East African Journal of Biophysical and Computational Sciences 5(1), 25–39.

Khan M, Patel R, Sharma L. 2021. DPPH assay-based evaluation of antioxidant activity in Actinomycetes-derived bioactive compounds. Journal of Applied Microbial Science 19(4), 215–230.

Kim J, Park H, Lee S. 2020. Morphological and cultural characterization of Streptomyces isolates using ISP media. Journal of Microbial Identification 30(4), 210–225.

Kumar R, Sharma V, Patel D. 2022. GC-MS profiling of bioactive metabolites from Actinomycetes isolates and their potential pharmaceutical applications. Journal of Natural Product Research 36(5), 230–245.

Kumari N, Menghani E, Mithal R. 2019. GC-MS analysis of compounds extracted from Actinomycetes AIA6 isolates and study of their antimicrobial efficacy.

Lakshmipatipathy D, Krishnan K. 2010. Antibacterial and antifungal activity of Streptomyces sp. VITDDK3 isolated from Ennore coast, Tamil Nadu, India. Journal of Pharmaceutical Research and Health Care 2, 186–196.

Luzhetskyy A, Pelzer S, Bechthold A. 2007. The future of natural products as a source of new antibiotics. Current Opinion in Investigational Drugs 8(8), 608–613.

Panatula N, Guntuku G, Palla MS, Muthyala MKK, Meka M, Jagadeeswara Reddy D. 2024. Isolation, screening and identification of biosurfactant producing strain Nocardiopsis dassonvillei var B2 from oil contaminated soil. Journal of Basic Microbiology 64(12), e2400504.

Patel R, Sharma P, Verma S. 2021. Morphological and microscopic characterization of Actinomycetes: A comparative study. Journal of Microbial Taxonomy 18(3), 145–158.

Pathma J, Sakthivel N. 2012. Microbial diversity of vermicompost bacteria that exhibit useful agricultural traits and waste management potential. SpringerPlus 1, 1–19.

Prastya ME, Simbolon S, Priyanto JA, Hasidu LOAF, Permatasari V, Primahana G, Suryanti E. 2025. Evaluation of antibacterial and antibiofilm effects from soil Streptomyces spp. against multidrug-resistant bacteria. Journal of Biosciences 32(1), 12–26.

Priya S, Roychoudhury PK, Kumar S. 2024. Biochemical characterization of Actinobacteria isolated from guava orchard soil: A promising source of industrial enzymes for bioethanol production.

Source : Purification and analysis of secondary metabolites from actinomycetes isolated from red soil:Insights into their therapeutic application

 

 

0 comments: