Horticultural Assessment of Pechay (Brassica rapa) Grown with Fish Waste-Based Organic Fertilizer Fermented with Molasses | InformativeBD

The horticultural characteristics assessment of Pechay (Brassica rapa) using fish and fish waste based-organic fertilizer fermented with molasses

Sheenah N. Domingo, Hannah Jane Bendejo, and Maria Danesa S. Rabia, from the different institute of the Philippines. wrote a research article about, Horticultural Assessment of Pechay (Brassica rapa) Grown with Fish Waste-Based Organic Fertilizer Fermented with Molasses. entitled,  The horticultural characteristics assessment of Pechay (Brassica rapa) using fish and fish waste based-organic fertilizer fermented with molasses. This research paper published by the International Journal of Biosciences (IJB). an open access scholarly research journal on Biosciences. under the affiliation of the International Network For Natural Sciences | INNSpub. an open access multidisciplinary research journal publisher.

Abstract

Nowadays, great amount of waste is being produce in the fish markets and processing industries. This study aims to find out the effect of using fish and fish waste as organic fertilizer on the growth of pechay. The study was arranged in a randomized setup with three (3) treatments and three (3) replications, each treatment has 30 samples. Among the treatments are T1– 50g/5g, T2-150g/10g and T3– 200 g/15 g). The study uses the one-way ANOVA. Results showed that T3 has the highest total mean growth of 16.4 cm and 15.77 cm in length compared to T2 and T1. The size of the leaves recorded with 14.37 cm and 7.96 cm wide.  A 100% survival rate was obtained in all treatments. Significant difference was observed in the size of the leaves, other showed not significant results.  The result is a good potential for adoption, especially it would benefit to the local farmers.

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Read moreAnuran Species Diversity and Microhabitat Preferences in Secondary Forest and Riverine Areasof Tangub City, Philippines | InformativeBD

Introduction

In recent years, the fish industry has generated a substantial amount of fish waste. Depending on the level of processing or type of fish, 30–70% of the original fish is fish waste. Circular economy and organic farming concepts were used to evaluate the potential of producing fertilizers from captured fish. Fertilizers produced from captured fish promote the recycling of nutrients from the sea and back to terrestrial environments. The nutritional composition of fish waste is assessed to determine the potential to supply plant nutrients such as nitrogen, or a combination of nitrogen and phosphorous, or to enrich a compost. In the research of Kenhudoy (2017) on the benefits of using fish and animal wastes as fertilizer, fish waste as soil fertilizer offers an organic solution and effectively provides nutrients to the soil for a blossom harvest. Even though some of the fish products have an unpleasant smell, they do have a lot of benefits for the crop, making them a healthy food source. Native Americans showed pilgrims how to use fish to fertilize their crops. From current findings, it is proven that the Native Americans were right about the benefits of using fish fertilizer.

Production and information about processing the fish waste were illustrated in the Organic Materials Review Institute (OMRI), indicating also the fishbased fertilizers industry and research in Europe. Converting fish waste like fish entrails into liquid fertilizer can be used to water or drench the plants. This liquid fertilizer could last for up to a year. The liquid produced in the fermentation process is called fish emulsion. The two main ingredients to make the emulsion are fish guts (entrails) and molasses. If molasses is not available, brown sugar is a good substitute. It is a sucrose product with a distinctive brown color due to the presence of molasses. The methods used in the processing of fish waste to produce fish emulsion, fish hydrolysate/fish silage, fish compost, and digestate from anaerobic digestion or co-digestion are presented in the study of Ahuja et al. (2020). The accumulation of fish waste should be a source of concern because it can pollute the water (Kusuma et al., 2019). It can be turned into organic manure, which is beneficial to fish farmers and sellers who discard fish waste (Jayvardhan, 2020). It is essential to treat fish waste to minimize the environmental effects (Kusuma et al., 2019). If we can properly dispose of it so that it can decompose, we can create jobs and make money by selling the manure.

On the other hand, the culture of pechay (Brassica rapa) in the Philippines is one of the fastest-growing vegetable industries. It is an important vegetable crop and has nutritional value as well as good commercial value. One of the most popular vegetables among consumers is always available in the market at any time of the year. It is known as one of the oldest vegetables in Asia; it therefore plays an important role in the Philippines’ economy as well as in the nutrition of the Filipino people. Pechay is used mainly for its immature, but fully expanded, tender leaves. The succulent petioles are often the preferred part. It is used as the main ingredient for soups and stir-fried dishes. In Chinese cuisine, its green petioles and leaves are also used as a garnish (Gonzales et al. 2005). On the other hand, our government agencies like the Department of Agriculture encourage Filipino farmers to switch to an alternative and healthy way of marketing high-value crops to have a higher income. Several practices are being taught, like going back to basics and using organic fertilizers rather than inorganic or synthetic ones. Fermented fish entrails are another alternative medium used as a substitute for economically important and easy growing vegetables like pechay and sweet pepper in this study.

There are several studies using fermented fish entrails mixed with fish molasses (Rabia, 2022), and even decomposed seaweeds and the bark of pine trees have been documented. In the study conducted by Diaz et al. (2011) on the growth and yield response of bell pepper to fish fertilizer and fermented fish juice as organic fertilizer, they found that fish gill emulsion fertilizer is comparable to commercial or synthetic fertilizers. It may be one of the best fertilizers to utilize for growing bell peppers. The compost made from fish waste has the added benefit of containing potassium, calcium, and magnesium. Composting is a biotransformation process that involves microorganisms converting organic materials into stable and complex macromolecules. It can be used as a soil enhancement to increase the texture and fertility of the soil, reducing the need for synthetic fertilizers (Maja et al., 2019). This waste can be helpful and valuable fertilizer in agriculture (Jayvardhan, 2020). No foul odors were detected in the fish waste fertilizer (Maja et al., 2019).

Molasses is a primary by-product in the fermentation industry and can be used in the food industry, such as in distilleries, sugar production, and yeast production (Li et al., 2020). It was high in calcium, magnesium, iron, and potassium. It also contains sulfur and a host of micronutrients (Susan Patterson and Master Gardener). Molasses has been used in the past as fertilizer on sandy soil and soil with poor structure (Pyakurel et al., 2019). Using molasses as a fertilizer provides plants with a quick source of energy and encourages the growth of beneficial microorganisms. When molasses is added to organic fertilizers, it provides food for the healthy microbes in the soil (Susan Patterson, Master Gardener). Molasses supplies carbohydrates and alters the C:N ratio, which affects soil microbial ecology, lowers plant parasitic nematodes, and provides other favorable effects on plant growth (Hilty et al., 2021). Molasses improves soil aggregation and reduces surface crusting in hard-setting soils (Wynne and Meyer, 2002). Molasses plant fertilizer is a great way to grow healthy plants, and as an added benefit, using molasses in gardens can help fend off pests. The fermentation process converts the solid substrates into simple molecules with the help of microbes. It is one of the promising technologies that converts fish waste into useful organic manure, an expensive resource for agriculture, without the formation of a fusty smell.

One of the problems encountered by some farmers nowadays is their inability to harvest crops on time and the low quality of the produce, particularly some leafy vegetables. Some fishermen also encountered challenges in the disposal of fish waste, which is very abundant in the locality. Many factors cause distractions in our world today, like pollution, inadequate solid waste disposal, global warming, climate change, and many others that affect our economic and environmental aspects. Our agricultural sector is widely affected by these problems. So, most of our farmers in the country use inorganic or synthetic fertilizers to boost plant resistance and improve or multiply their yield compared to the usual or natural cycle.

Fish are consumed as food in fresh conditions. Some of them are also utilized after the preservation. During preservation and processing, some materials from fish and prawns are discarded as waste. Similarly, some trash and distasteful fish are unsuitable for human consumption. These waste materials and the above fish become an important source for producing fish by-products, which in turn are used to produce different useful fish by-products. Organic agriculture or organic farming seeks to provide good quality and healthy foods while not harming the environment, maintaining soil fertility, and using synthetic materials. There is a growing demand for organic products in both local and global markets that is likely to be significant in the future. Fertilizers produced from captured fish promote the recycling of nutrients from the sea and back to terrestrial environments. The nutritional composition of fish waste is assessed to determine the potential to supply plant nutrients such as nitrogen, or a combination of nitrogen and phosphorous, or to enrich a compost. Methods used in the processing of fish waste to produce fish emulsion, fish hydrolysate/fish silage, fish compost, and digestate from anaerobic digestion or co-digestion are presented.

With these, siganids are the most abundant fish in the locality; with the common name of rabbitfishes, they are essential to reef herbivores that browse individually or in schools over the reef or feed on plankton within the water column (Nelson, 1994; Kenhudoy, 2017). Siganids' fish waste weighs from 10 to 20 grams per fish, depending on the size of the fish. It contains the nutritional contents found in rabbit fish, which are amino acids, fatty acids, protein, vitamins, and other essential minerals. According to the International Food Research Journal in Indonesia, samples of fish filleted without skin contained 77.79% moisture, 15.93% protein, 1.01% ash, and 0.93% fat. Rabbit fish also contained nine (9) essential and seven non-essential amino acids. Glutamic acid was the most abundant amino acid with a level of 1.983 mg/100 g. The eicosatetraenoic acid (EPA), docosahexaenoic acid (DHA), and arachidonic acid (ARA) quantities were 0.54%, 6.45%, and 1.21%, respectively. So, these ideas trigger the researchers to use the fish waste as fertilizer in the culture of vegetables, particularly the pechay, which is considered an economically important crop because it is easy to grow, is available throughout the year, and is both an excellent source of different nutrients. This research study aims to determine the performance of pechay (Brassica rapa) grown in a container using fermented siganid entrails as organic fertilizer. This study also aims to determine the effects of using fish waste as organic fertilizer on the productivity of vegetable production. These could also have the potential for the replacement of other dried poultry manure from conventional farming in organic farming.

Reference

Ahuja I, Dauksas E, Remme J, Richardsen R, Løes A-K. 2020. Fish and fish waste-based fertilizers in organic farming – With status in Norway: A review. Waste Management 115. 95-112. DOI: 10.1016/j.wasman.2020.07.025.

Diaz FA, Baladjay MJS, Tadle FC. 2011. The Growth and Yield Response of Bell Pepper (Capsicum annum L.) to Fish Fertilizer and Fermented Fruit Juice as Organic Fertilizer. https://www.scribd.com/doc/51372857/The-Growth-and-Yield-Response-of-Bell-Pepper-to-Fermented-Fruit-Juice-and-Fish-Fertilizer

Gonzales LM, Caralde R, Aban M. 2015. Response of Pechay (Brassica napus L.) to Different Levels of Compost Fertilizer. International Journal of Scientific and Research Publications 5, 1-2250.

Jayvardhan VB. 2020. Devising of Organic Fertilizer from Fish and Crab Wastes: Waste to Best Technology. International Journal of Fisheries and Aquatic Studies 8(2), 01-05.

Hilty J, Muller B, Pantin F, Leuzinger S. 2021. Plant growth: the What, the How, and the Why. New Phytologist 232, 25–41. DOI: 10.1111/nph.17610

Kenhudoy. 2017. Benefits of using fish and waste as fertilizer. Retrieved from https://steemit.com/gardening/@kenhudoy/benefits-of-using-fish-and-fish-waste-as-fertilizer-a-must-read. Accessed on September 2020.

Kusuma I, Syafrudin S, Yulianto, B. 2019. Utilization of Fish Waste Processing as Compost Raw Material in Tambak Lorok Market. E3S Web of Conferences 125. 07004. DOI: 10.1051/e3sconf/201912507004.

Maja R, Magdalena DV, Dana A, Martin B, Zbigniew M. 2019. Valorization of Fish Waste Compost as a Fertilizer for Agricultural Use. Waste and Biomass Valorization. DOI: 10.1007/s12649-018-0288-8.

Nelson JS. 1994. Fishes of the World–Third Edition. New York, NY: John Wiley and Sons. Retrieved from https://www.cambridge.org/core/journals/journal-of-the-marine-biological-association-of-the-united-kingdom/article/js-nelson-fishes-of-the-world-3rd-edition-xvii-600p-john-wiley-and-sons-1994-price-6600/D29EA27EA193D17C458552ACF3EC29C0. Accessed on October 09, 2019.

Li S, Zhao X, Ye X, Zhang L, Shi L, Xu F, Ding G. 2020. The Effects of Condensed Molasses Soluble on the Growth and Development of Brassica napus through Seed Germination, Hydroponics and Field Trials. Agriculture 10(7), 260. https://doi.org/10.3390/agriculture10070260.

Pyakurel, Anish, Dahal BR, Rijal S. 2019. Effect of Molasses and Organic Fertilizer in Soil fertility and Yield of Spinach in Khotang, Nepal. Int. J. Appl. Sci. Biotechnol. 7(1), 49-53. DOI: 10.3126/ijasbt.v7i1.23301.

Rabia MDS. 2022. Fish molasses as indigenous nutrient source in the growth and yield of economically important vegetables in simple nutrient addition program (SNAP) hydroponics system. International Journal of Biosciences 2(1), 155-162.

Waynne A. Meyer J. 2002. An Economic Assessment of Using Molasses and Condensed Molasses Solids as a Fertilizer in the South African Sugar Industry. Accessed on July 18, 2024 from https://www.semanticscholar.org/paper/AN-ECONOMIC-ASSESSMENT-OF-USING-MOLASSES-AND-SOLIDS-Wynne-Meyer/aab884d2b839f91b33c95496f74d219e3d92c0d7 

Source: The horticultural characteristics assessment of Pechay (Brassica rapa) using fish and fish wastebased-organic fertilizer fermented with molasses 

Anuran Species Diversity and Microhabitat Preferences in Secondary Forest and Riverine Areas of Tangub City, Philippines | InformativeBD

Diversity and microhabitat preferences of anuran species in the secondary forest and riverine areas in Tangub City, Misamis Occidental, Philippines

Ruth C. Maminta , Jesha Mea P. Sagario , and Monaliza Joy Zaragoza-Magsayo, from the different institute of the Philippines. wrote a research article about, Anuran Species Diversity and Microhabitat Preferences in Secondary Forest and Riverine Areas of Tangub City, Philippines. Entitled, Diversity and microhabitat preferences of anuran species in the secondary forest and riverine areas in Tangub City, Misamis Occidental, Philippines. This research paper published by the Journal of Biodiversity and Environmental Sciences (JBES). an open access scholarly research journal on Biodiversity. under the affiliation of the International Network For Natural Sciences | INNSpub. an open access multidisciplinary research journal publisher.

Abstract

The research study focused on the diversity and microhabitat preferences of anuran species in secondary forests and riverine areas in Tangub City, Misamis Occidental. It was particularly conducted in three different elevations (upper, mid, and lower) at Barangay Manga and Barangay Hoyohoy. Visual Encounter Survey and Capture-mark-release methods were used. Fifteen (15) species belonging to six (6) families were identified from 276 individuals captured, namely: Ansonia mcgregori, Ansonia muelleri, Ingerophrynus  philippinicus, Rhinella marina, Fejevarya vittigera, Hoplobatrachus rugulosus, Limnonectes leytensis, Limnonectes magnus, Kalophrynus sinensis, Kaloula pulchra, Leptobrachium lumadorum, Megophrys stejnegeri, Leptomantis bimaculatos, Polypedates leucomystax, and Pulchrana grandocula, of which eleven species are endemics and four species are non-endemics. Both study areas attained moderate species diversity, however Barangay Hoyohoy showed a higher similarity index among all sampling sites. Most anuran species encountered preferred aquatic microhabitats, with Pulchrana grandocula as the most abundant species (69.99%) observed. Relative humidity as an environmental factor influenced its abundance in each sampling area. Primary threats such as human disturbances and habitat destruction were observed in Barangay Manga. Thus, researchers recommend conservation strategies and enforcement of policies to protect the study areas as well as anurans assemblage.

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Read moreEffect of Colchicine on In-vitro Cultures of Turmeric (Curcuma longa L.) for Polyploid Development | InformativeBD

Introduction

Anurans are crucial in the food web, particularly for insect control, and serve as natural bioindicators of ecosystem health (Mohagan et al., 2018). Their sensitivity to environmental changes makes them valuable indicators of ecological integrity and watershed health. The Philippine archipelago is one of the most mega-diverse countries in the world, hosting a large number of endemic plant and animal species, particularly in its rainforests (Lavides et al., 2004). Mindanao, situated in the southern region of the Philippines, is considered home to various endemic species (Diesmos et al., 2015). According to Solania and Fernandez-Gamalinda (2018), there were 141 individuals of anurans recorded, of which 73% were Philippine endemics, and 36% were Mindanao faunal endemics. However, a large portion of Mindanao remains unexplored (Dela Torre and Nuñeza, 2021), and many new species are still being described (Siler et al., 2009).

Anurans utilize both terrestrial and aquatic microhabitats, exhibiting overlap in microhabitat preferences (Plaza and Sanguila, 2015). Anurans are most likely to seek cooler microhabitats with lower temperatures and higher relative humidity (Aureo and Bande, 2019). Their dependence on moist conditions and high humidity means that amphibian diversity is highest in regions with high precipitation and lower evaporative water loss (West, 2018). For decades, amphibian populations faced decline due to habitat destruction, overexploitation, quarrying, land conversion, and alteration of habitat that favors invasive species, which threaten native amphibian species (Mapi-ot et al., 2015). Currently, more than 150,300 species are recorded according to the IUCN Red List (2023), with over 42,100 species considered threatened with extinction, including 41% of amphibian species. Thus, the presence of potentially threatened anurans implies a need for conservation measures for species protection.

Research beyond Mt. Malindang to lowland areas, where anuran populations are more vulnerable to disturbances, is needed (Nuneza et al., 2010). Tangub City, sheltered by Mt. Malindang and Panguil Bay, faces threats to its anuran habitats due to human population growth and deforestation (Nuneza et al., 2010). Barangay Hoyohoy shows potential as a tourist destination, while Barangay Manga is crucial for irrigation and water quality maintenance. Understanding anurans in these areas is essential for ecosystem health and conservation. To bridge this gap, researchers undertook a comprehensive study aimed to identify the diversity and microhabitat preferences of anuran species in secondary forest and riverine areas of Tangub City, Misamis Occidental. The findings serve as baseline data for the policymakers to improve conservation and management efforts and highlight local awareness as to their role in maintaining anuran diversity.

Reference

Ates FB, Delima EMM. 2008. Assemblage and microhabitats of anurans from Mt. Sinaka, Arakan, Cotabato and Mt. Hamiguitan, Davao Oriental, Mindanao Island, Philippines. Zenodo (CERN European Organization for Nuclear Research).

Aureo WA, Bande M. 2019. Impact of anthropogenic disturbance on anurans habitat and species richness in Silago, Southern Leyte, Philippines. Journal of Biodiversity and Environmental Sciences 15(1), 38‑45.

Aureo WA, Decena SC. 2022. Habitat alteration affects the diversity and assemblage of amphibians in Rajah Sikatuna protected landscape of Bohol, Philippines. Research Square.

Coritico FB, Sinamban EB, Mohagan AB, Amoroso VB. 2018. Preliminary report on the anurans of Mt. Pantaron Range, Bukidnon, Central Mindanao, the Philippines. Journal of Nature Studies 17(1), 9-23.

Decena SCP, Macasait Jr, DR, Arguelles MS. 2023. Species accounts, assemblage and microhabitats of amphibians and reptiles of Northeastern Leyte, Philippines. Philippine Journal of Science 152(1).

Dela Torre VCP, Nuneza OM. 2021. Species diversity, distribution, and microhabitats of anurans on Mt. Kalo-Kalo of the Mt. Kalatungan Range Natural Park, Bukidnon, Philippines. Asian Herpetological Research 12(1), 58–75.

Delima-Baron EM, Ruales CAS, Tripole C, Tagoon MDT, Susulan TB. 2022. Anurans of select green spaces of Davao City, Mindanao Island, Philippines. Biodiversitas 23(9).

Diesmos AC, Watters JL, Huron NA, Davis DR, Alcala AC, Crombie RI, Afuang LE, Gee Das G, Sison RV, Sanguila MB, Penrod ML, Labonte MJ, Davey CS, Leone EA, Diesmos ML, Sy EY, Welton LJ, Brown RM, Siler CD. 2015. Amphibians of the Philippines, Part I: Checklist of the species. Proceedings of the California Academy of Sciences 62, 457–540.

IUCN. 2023. The IUCN Red List Threatened Species. Available at: https://www.iucnredlist.org/

Lavides M, Plantilla A, Mallari NA, Tabaranza Jr B, dela Paz B, Nozawa CM. 2004. Building support for and beyond protected areas in the Philippines: A Haribon’s journey of transformations. In: Communicating Protected Forest, 1st ed. Gland, Switzerland and Cambridge, UK: IUCN, 46-58.

Mapi-ot EF, Bendoy CP, Palacio MMS. 2015. Species richness and endemism of amphibian along the riparian system of Clarin River Misamis Occidental. Journal of Multidisciplinary Studies 4(1).

Mohagan AB, Nuñeza OM, Diesmos AC, Escarlos Jr JA, Gracia Jr AG, Selpa ECT, Amoroso VB. 2018. Anuran species richness and endemism in four long-term ecological research sites in Mindanao, Philippines. Asian Journal of Conservation Biology 7(2), 83-91.

Ngilangil M, Boyles L, Sularte R. 2014. Abundance, distribution and conservation status of reptiles in Agusan Marsh, Bunawan, Agusan del Sur, Philippines. International Journal of Advances in Chemical Engineering and Biological Sciences 1, 149-154.

Nuñeza OM, Ates FB, Alicante AA. 2010. Distribution of endemic and threatened herpetofauna in Mt. Malindang, Mindanao, Philippines. Biodiversity and Conservation 19(2), 503–518.

Nuñeza OM, Non ML, Oconer E, Aljibe M. 2017. Species richness and endemism of anurans in Mt. Matutum protected landscape, South Cotabato, Philippines. Journal of Biological and Environmental Sciences 10(5), 1.

Plaza JL, Sanguila MB. 2015. Preliminary report on the anurans of Mount Hilong-hilong, Agusan del Norte, Eastern Mindanao, Philippines. Asian Herpetological Research 6(1), 18-33.

Source :Diversity and microhabitat preferences of anuran species in the secondary forest and riverine areas in Tangub City, Misamis Occidental, Philippines

   

Effect of Colchicine on In-vitro Cultures of Turmeric (Curcuma longa L.) for Polyploid Development | InformativeBD

Study on the effect of colchicine on in-vitro cultures of turmeric (Curcuma longa L.) approach to polyploid development

Rathnayaka Mudiyanselage Nilan Suneth Dayarathna , Dandudeniye Gedara Harsha Manoj Kumara Dissanayake , Prathiba Aruni Weerasinghe, and Randeniya Mudiyanselage Erandi Madushika Kumari Randeniya,  from the different institute of the Sri Lanka. wrote a research article about, Effect of Colchicine on In-vitro Cultures of Turmeric (Curcuma longa L.) for Polyploid Development. Entitled, Study on the effect of colchicine on in-vitro cultures of turmeric (Curcuma longa L.) approach to polyploid development. This research paper published by the International Journal of Agronomy and Agricultural Research (IJAAR). an open access scholarly research journal on Agronomy. under the affiliation of the International Network For Natural Sciences | INNSpub. an open access multidisciplinary research journal publisher.

Abstract

Crop improvement possibilities in turmeric Curcuma longa (L.) are limited due to its triploid nature except for polyploidisation. Colchicine is a chemical that is used frequently to make plants polyploidy. Hence, this research aimed to study the effect of colchicine on the ability to induce polyploidisation of in-vitro turmeric cultures. The study consisted of two experiments: (1) assay on in-vitro culturing for callus induction and (2) assay on colchicine treatments and polyploidy screening. In experiment 1, turmeric rhizome buds were cultured on MS-solidified medium for callus induction with 100 mL coconut water, 2.5 and 4.5 mg L-1 2,4-D, 0.93 mg L-1 KIN, and without growth regulators. In addition, cell suspension culture was tested for callus induction with 4.5 mg L-1 2,4-D and 0.93 mg L-1 KIN.  For polyploidy induction in experiment 2, in-vitro developed callus tissues were transferred to liquid MS medium supplemented with various concentrations of colchicine (0, 0.05, 0.10, 0.15, and 0.20%) for 2 days. Then acetocarmine staining method and microscopic observation were attempted to count the chromosome number. Nucleus size; nucleus area (µmSq) and perimeter (µm) were referred using microscopic observation under 1000× magnification and BEL capture software. The results revealed that MS-solidified medium supplemented with coconut water was most effective in inducing callus. The nucleus area (371.225 µmSq) and perimeter (65.725 µm) of the cells in 0.05% colchicine for 2 days showed the highest results. It can be concluded that 0.05% colchicine concentration has an effect on nuclear size increment thereby possibly inducing polyploidization of turmeric.

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Read more : Rapid Geomorphic Assessment of Musimusi River in Balingasag, Misamis Oriental, Philippines |InformativeBD 

Introduction

Turmeric is regarded as the golden spice with innumerable health benefits. Turmeric, scientifically known as Curcuma longa L. belongs to the Zingiberaceae family and genus Curcuma. Turmeric is cultivated most extensively in India, followed by Bangladesh, China, Thailand, Cambodia, Malaysia, Indonesia, and the Philippines. In most tropical regions of Africa, America, and the Pacific Ocean Island, it is also grown on a modest basis. The world’s biggest producer, importer, and user of turmeric is India (Shrishail et al., 2013).

It has many cultivars due to its highly variable morphology and the wide range of chromosome numbers in the genus, with diploid, triploid, and tetraploid plants. Curcuma longa belongs to the triploid species (2n=3x=63), a rhizomatous perennial herb whose rhizome is used as one of the most common sources of spices in the world. Turmeric's unique flavour has made it popular for usage as a flavoring ingredient, cosmetic, textile dye, and other applications. Major active ingredients of turmeric include three curcuminoids; curcumin, demethoxycurcumin, and bisdemethoxycurcumin , among curcumin is the main chemical component of turmeric with 0.3-8.6% (Phukan et al., 2022). 

Study on the effect of colchicine on in-vitro cultures of turmeric (Curcuma longa L.) approach to polyploid development

Turmeric is a highly valuable plant in the world. Therefore, crop improvement is timely and important for turmeric, targeting high-yielding varieties and enhancing the quality and quantity of curcumin, with high oleoresin and essential oil content, to overcome the hybridisation barrier and enhance the fertility of the plant, pest resistance, environmental adaptability, and stress tolerance for biotic and abiotic stress (Forrester et al., 2020).

Turmeric is propagated by vegetative propagules that sustain the genetic makeup of the crop throughout the generations therefore; the genetic diversity is very low in turmeric. A spontaneous mutation is one way of generating genetic diversity (Ulukapi and Nasircilar, 2018). However, it is a very rare chance to happen (Oladosu et al., 2016). Also, there are many problems when considering conventional breeding of turmeric (Curcuma longa L.) and crop improvement (Dudekula et al., 2022). This is a monocotyledonous species, rarely flowering. It is classified as a sterile triploid plant (2n = 3x = 63) and cannot be used as parents for further breeding and to produce sterile flowers with no gametes. Therefore, having drawback of making inter-specific crosses (Ketmaro et al., 2012). Also, during the growing season (8-10 months) each rhizome can produce 10-25 lateral buds, but only 4-6 of them actively develop plantlets. Due to its nature, it has a limited genetic diversity and therefore, crop improvement and conventional breeding is difficult (Upendri and Seran, 2021). Thus a research was aimed to study the effect of colchicine on the ability to induce polyploidisation of invitro turmeric cultures.

Reference

Dudekula MV, Kandasamy V, Balaraman SS, Selvamani SB, Muthurajan R, Adhimoolam K, Manoharan B, Natesan S. 2022. Unlocking the genetic diversity of Indian turmeric (Curcuma longa L.) germplasm based on rhizome yield traits and curcuminoids. Frontiers in Plant Science 13, 1-15.

Forrester NJ, Rebolleda GM, Sachs JL, Ashman TL. 2020. Polyploid plants obtain greater fitness benefits from a nutrient acquisition mutualism. New Phytologist 227(3), 944-954.

Gourguillon L, Rustenholz C, Lobstein A, Gondet L. 2018. Callus induction and establishment of cell suspension cultures of the halophyte Armeria maritima (Mill.) Willd. Scientia Horticulturae 233, 407-411.

Islam MM, Deepo DM, Nasif SO, Siddique AB, Hassan O, Siddique AB, Paul NC. 2022. Cytogenetics and consequences of polyploidization on different biotic-abiotic stress tolerance and the potential mechanisms involved. Plants 11(20), 2684.

Kamath A, Mehal W, Jain D. 2008. Colchicine-associated ring mitosis in liver biopsy and their clinical implications. Journal of Clinical Gastroenterology 42(9), 1060-1062.

Ketmaro S, Taychasinpitak T, Mongkolchaiyaphruek A, Wongchaochant S. 2012. Effect of colchicine on increasing pollen viability in a curcuma hybrid (Curcuma sparganifolia × C. parviflora). Kasetsart Journal – Natural Sciences 46, 363-370.

Kou Y, Ma G, Teixeira da Silva JA, Liu N. 2013. Callus induction and shoot organogenesis from anther cultures of Curcuma attenuata Wall. Plant Cell, Tissue and Organ Culture 112, 1-7.

Manzoor A, Ahmad T, Bashir MA, Hafiz IA, Silvestri C. 2019. Studies on colchicine induced chromosome doubling for enhancement of quality traits in ornamental plants. Plants 8(7), 194.

Michael PS. 2011. Effects of coconut water on callus initiation and plant regeneration potentials of sweet potato. In Journal and Proceedings of the Royal Society of New South Wales 144, 91-101.

Oladosu Y, Rafii MY, Abdullah N, Hussin G, Ramli A, Rahim HA, Miah G, Usman M. 2016. Principle and application of plant mutagenesis in crop improvement: A review. Biotechnology & Biotechnological Equipment 30(1), 1-16.

Phukan M, Sahariah M, Sahu S. 2022. Study of curcumin content and adulterants present in different marketed brands of turmeric powder. Current Trends in Pharmaceutical Research 8(2).

Shrishail D, Harish KH, Ravichandra H, Tulsianand G, Shruthi SD. 2013. Turmeric: Nature’s precious medicine. Asian Journal of Pharmaceutical and Clinical Research 6(3), 10-16.

Srivastava P, Singh M, Chaturvedi R. 2020. Herbal medicine and biotechnology for the benefit of human health. In Animal biotechnology, Models in Discovery and Translation, 563-575.

Ulukapi K, Nasircilar AG. 2018. Induced mutation: creating genetic diversity in plants. In: Mohamed A. El-Esawi, Ed. Genetic Diversity in Plant Species-Characterization and Conservation. Intech Open. 96.

Upendri HFL, Seran TH. 2021 In vitro propagation of turmeric (Curcuma longa L.) through direct somatic embryogenesis with reference to types of explants and plant growth regulators: A review. Revista de la Facultad de Ciencias Agranomicas, UNR 21(38).

SourceStudy on the effect of colchicine on in-vitro cultures of turmeric (Curcuma longa L.) approach topolyploid development  

 

Rapid Geomorphic Assessment of Musimusi River in Balingasag, Misamis Oriental, Philippines | InformativeBD

Rapid geomorphic assessment of the Musimusi River in Balingasag Misamis oriental Philippines

Jr. Sansen A. Handag, Frandel Louis S. Dagoc , Wella T. Tatil , Peter D. Suson, and Jr. Ruben F. Amparado, from the different institute of the Philippines. wrote a research article about, Rapid Geomorphic Assessment of Musimusi River in Balingasag, Misamis Oriental, Philippines. Entitled, Rapid geomorphic assessment of the Musimusi River in Balingasag Misamis oriental Philippines. This research paper published by the Journal of Biodiversity and Environmental Sciences (JBES). an open access scholarly research journal on Biodiversity. under the affiliation of the International Network For Natural Sciences | INNSpub. an open access multidisciplinary research journal publisher.

Abstract

The study was conducted to identify locations of streambank instability to prioritize restoration needs and slow sedimentation rates on the Musimusi River. Relying on rapid geomorphic assessments (RGAs) has been a common practice for determining the priority of stream reaches. In this study, an established RGA called the channel stability index (CSI) was utilized to evaluate multiple sections of the Musimusi and Camuayan rivers. Four (4) stream reaches got a CSI score higher than 20, considered “highly unstable.” These are the streams that reach 6, 10, 11, and 12. The CSI scores for at least one reach at all the sites fell within the higher range of the “moderately stable” classification, as indicated by the fact that the rest had CSI scores ranging from 10 to 20, which is considered “moderately unstable.” This indicates that the four highly unstable reaches are in a state of degradation, evident by the lowering of the channel bed and consequent increase of bank heights, incision without widening, and bank toe material removed, causing an increase in bank angle while those moderately unstable reaches in the Musimusi River. Its main tributary- the Camuayan River, is in a state of aggradation and widening, evidenced by the lowering of the river bed due to deposition and shifting of the channel banks

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Introduction

Soil erosion is defined as the natural phenomenon in which the removal and transportation of soil material occur mainly through the action of erosive agents such as water, wind, gravity, and human disturbances (Bhandari et al., 2021.) in a riverbank environment erosion of river banks results in alterations to the shape and size of the river and is a necessary process that moves floodplain sediment to contribute to the overall sediment supply of the basin (Allmanová et al., 2021). Sediment is one of the leading causes of water impairment. Identifying areas susceptible to streambank erosion within stream and river networks is essential in understanding the source of instream sediment (Jiang et al., 2020).

Current stability conditions within a river basin can be examined using diagnostic criteria of contemporary geomorphic processes. These are called rapid geomorphic assessments (RGAs), and they use diagnostic criteria of channel form to infer dominant channel processes and the magnitude of channel instabilities through a series of questions. The channel stability index (CSI) is one of the RGAs that is most frequently utilized. Through geomorphic assessment, the rivers and streams comprising a watershed drainage network can be broken into distinctive reaches and similar reach types grouped (Papangelakis et al., 2023). Rapid geomorphic assessments (RGAs) provide a quick method for characterizing stream reaches, defined as lengths or segments of a stream with similar streambank characteristics in terms of bank height and stratigraphy and their degree of stability (Miller et al., 2021). The leading cause of the streambank failures observed in small agricultural catchments is the undercutting of bank toe and resulting steepening of the slope, while the triggers are either hydrological factors (snow melt, intensive/prolonged rainfall) or human activity (using heavy machinery close to the edge of streambanks) (Sidle et al., 2023). Numerous research studies have demonstrated the significant contribution of streambank erosion to total sediment loading (Hughes et al., 2022). Therefore, this study aims to assess and identify locations of streambank instability to prioritize restoration needs and slow sedimentation rates on the Musimusi River

Reference 

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Abbass ZD, Maatooq JS, Al-Mukhtar MM. 2023. Monitoring and Modelling Morphological Changes in Rivers Using RS and GIS Techniques. Civil Engineering Journal 9(3), 531–543. https://doi.org/10.28991/CEJ-2023-09-03-03

Allmanová Z, Vlčková M, Jankovský M, Allman M, Merganič J. 2021. How can stream bank erosion be predicted on small water courses? Verification of BANCS model on the Kubrica watershed. International Journal of Sediment Research 36(3), 419–429. https://doi.org/10.1016/J.IJSRC.2020.10.008

Bhandari D, Joshi R, Regmi RR, Awasthi N. 2021. Assessment of soil erosion and its impact on agricultural productivity by using the RMMF model and local perception: A case study of Rangun Watershed of Mid-Hills, Nepal. Applied and Environmental Soil Science 2021, 1–10. https://doi.org/10.1155/2021/5747138

Crespo-Azorín Martínez C. 2021. Evaluación de la estabilidad del cauce y diseño de la restauración ecológica del río Baron Fork, Condado de Adair, Oklahoma (EE. UU.). https://riunet.upv.es:443/handle/10251/173297

Duru U. 2017. The role of human activities in streambank stability: Lower Sakarya River (NW Turkey). Journal of Geosciences and Geomatics 5(3), 130–135. https://doi.org/10.12691/jgg-5-3-4

Eaton BC, MacKenzie LG, Booker WH. 2020. Channel stability in steep gravel–cobble streams is controlled by the coarse tail of the bed material distribution. Earth Surface Processes and Landforms 45(14), 3639–3652. https://doi.org/10.1002/esp.4994

Galia T, Škarpich V, Gajdošová K, Krpec P. 2017. Variability of Wolman pebble samples in gravel/cobble bed streams. Acta Scientiarum Polonorum Formatio Circumiectus 1, 237–246. https://doi.org/10.15576/ASP.FC/2017.16.1.237

Graziano MP, Deguire AK, Surasinghe TD. 2022a. Riparian buffers as a critical landscape feature: Insights for riverscape conservation and policy renovations. Diversity 14(3), 172. https://doi.org/10.3390/d14030172

Hughes AO, Huirama MK, Owens PN, Petticrew EL. 2022. Stream bank erosion as a source of sediment within New Zealand catchments. New Zealand Journal of Marine and Freshwater Research 56(4), 632–655. https://doi.org/10.1080/00288330.2021.1929352

Jiang G, Lutgen A, Mattern K, Sienkiewicz N, Kan J, Inamdar S. 2020. Streambank legacy sediment contributions to suspended sediment‐bound nutrient yields from a Mid‐Atlantic, Piedmont watershed. JAWRA Journal of the American Water Resources Association 56(5), 820–841. https://doi.org/10.1111/1752-1688.12855

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Nóbrega RLB, Ziembowicz T, Torres GN, Guzha AC, Amorim RSS, Cardoso D, Johnson MS, Santos TG, Couto E, Gerold G. 2020. Ecosystem services of a functionally diverse riparian zone in the Amazon–Cerrado agricultural frontier. Global Ecology and Conservation 21, e00819. https://doi.org/10.1016/J.GECCO.2019.E00819

Papangelakis E, Hassan MA, Luzi D, Burge LM, Peirce S. 2023. Measuring geomorphology in river assessment procedures 1: a global overview of current practices. JAWRA Journal of the American Water Resources Association 59(6), 1342–1359. https://doi.org/10.1111/1752-1688.13146

Rabanaque MP, Martínez‐Fernández V, Calle M, Benito G. 2022. Basin‐wide hydromorphological analysis of ephemeral streams using machine learning algorithms. Earth Surface Processes and Landforms 47(1), 328–344. https://doi.org/10.1002/esp.5250

Shu A, Duan G, Rubinato M, Tian L, Wang M, Wang S. 2019. An experimental study on mechanisms for sediment transformation due to riverbank collapse. Water, 11(3), 529. https://doi.org/10.3390/w11030529

Sidle RC, Caiserman A, Jarihani B, Khojazoda Z, Kiesel J, Kulikov M, Qadamov A. 2023. Sediment sources, erosion processes, and interactions with climate dynamics in the Vakhsh River Basin, Tajikistan. Water 16(1), 122. https://doi.org/10.3390/w16010122

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SourceRapid geomorphic assessment of the Musimusi River in Balingasag Misamis oriental Philippines 


In Silico Inhibition Study of Phytocompounds from Medicinal Plants Against Breast Cancer Proteins | InformativeBD

In silico inhibition study of phytocompounds derived from Bryophyllum pinnatum, Cassia sieberiana, Cassia tora and Tamarindus indica against breast cancer proteinsH. S. Gadanya , M. N. Nuhu , M. Muhammad , and I. Y. Habib, from the different institute of the Nigeria. wrote a research article about, In Silico Inhibition Study of Phytocompounds from Medicinal Plants Against Breast Cancer Proteins. Entitled, In silico inhibition study of phytocompounds derived from Bryophyllum pinnatum, Cassia sieberiana, Cassia tora and Tamarindus indica against breast cancer proteins. This research paper published by the International Journal of Biomolecules and Biomedicine (IJBB). an open access scholarly research journal on Biomedicine. under the affiliation of the International Network For Natural Sciences | INNSpub. an open access multidisciplinary research journal publisher.

Abstract 

Breast cancer is a type of cancer that originates in the cells of the breast tissues. B. pinnatum, C. sieberiana, C. tora and T. indica are the four medicinal plants whose phytochemicals were used for this In silico study. In this study, eight different ligands were evaluated for their interactions with the human epidermal growth factor 2 (HER2) protein (PDB ID: 3pp0). The ligands, including Apigenin, Bryophyllin A, Catechin, Emodin, Islandicin, Quercetin, Sitosterol, and Taxifolin, were assessed based on binding scores and hydrogen bond interactions. Among these ligands, Apigenin exhibited the highest binding score (- 6.5 kcal/mol), indicating its strong binding affinity to the HER2 protein. Bryophyllin A also displayed a significant binding score (- 6.3 kcal/mol) and formed a hydrogen bond with Met 901. Catechin, while having a slightly lower binding score (- 5.9 kcal/mol), engaged in hydrogen bonds with Ser 728, Arg 849, and Asn 850. Emodin, Quercetin, and Taxifolin demonstrated moderate binding scores (- 6.2, – 6.4, and – 6.0 kcal/mol, respectively) and formed hydrogen bonds with Asp 863 and Met 801. Islandicin formed a hydrogen bond with Gly 787 and Leu 786, with a binding score of – 6.1 kcal/mol. Sitosterol exhibited the lowest binding score (- 5.3 kcal/mol) but still established a hydrogen bond with Asp 863 and Met 801. Overall, Apigenin and Bryophyllin A emerged as the most promising ligands due to their strong binding affinities and specific hydrogen bond interactions with HER2. However, experimental validation is essential to confirm these findings and explore their potential as inhibitors or modulators of HER2. Furthermore, all ligands were successfully docked to the active sites of the HER2 protein, indicating their potential relevance in targeting HER2-related pathways. Importantly, the ligands exhibited favorable pharmacokinetic properties with no violations, except for Sitosterol, which showed minor violations in Lipinski, Ghose, Egan, and Muegge’s rules.

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Read more Biophysical Factors Affecting Height and Diameter Structures of Falcata (Falcatariafalcata) in Agusan del Norte, Philippines | InformativeBD

Introduction

Breast cancer is a type of cancer that originates in the cells of the breast tissues. It primarily affects women but can also occur in men. It is characterized by the uncontrolled growth of abnormal cells in the breast tissue, forming a lump or mass called a tumor (Dashti et al., 2020). Breast cancer can spread to other parts of the body through the lymphatic system or bloodstream, leading to metastasis (Iqbal and Iqbal, 2014; Pegram and Jackisch, 2023). Early detection and advancements in treatment have significantly improved the prognosis and survival rates for those diagnosed with breast cancer (Pegram and Jackisch, 2023). The exact causes of breast cancer are not fully understood, but several risk factors have been identified. These include genetics (family history of breast cancer or carrying certain mutations like BRCA1 and BRCA2), hormonal factors (early onset of menstruation, late menopause, hormone replacement therapy), age (risk increases with age), certain inherited gene mutations, exposure to ionizing radiation, obesity, alcohol consumption, and more (Sun et al., 2017). While these factors can increase the risk, not everyone with these risk factors will develop breast cancer. Breast cancer can have wide-ranging effects on individuals physically, emotionally, and socially. Physically, it can lead to symptoms such as a lump in the breast, changes in breast size or shape, skin changes, and nipple discharge (Kim, 2021; Sun et al., 2017). Emotionally, the diagnosis can cause anxiety, fear, depression, and uncertainty. Socially, it may impact relationships and daily life. The effects of treatment, including surgery, chemotherapy, radiation, and hormone therapy, can also cause physical and emotional challenges. Treatment for breast cancer depends on the stage and type of cancer, as well as individual factors (Iqbal and Iqbal, 2014; Pegram and Jackisch, 2023). Common treatments include surgery (lumpectomy or mastectomy), radiation therapy, chemotherapy, targeted therapy, hormone therapy, and immunotherapy (Burguin and Diorio, 2021; Moo et al., 2019). Treatment plans may involve a combination of these approaches (Pegram and Jackisch, 2023). The goal is to remove or destroy the cancer cells, prevent recurrence, and improve overall quality of life (Moo et al., 2019). Researchers have identified specific molecular and genetic targets that play a role in the development and growth of breast cancer. Targeted therapies focus on these specific molecules, receptors, and genetic mutations to inhibit cancer growth (Burguin and Diorio, 2021). Some targeted therapies are designed to block hormone receptors (such as estrogen or progesterone receptors), while others target overexpressed proteins like HER2. HER2, or human epidermal growth factor receptor 2, is a protein that plays a role in regulating cell growth and division. In some breast cancers, there is an overexpression or amplification of the HER2 gene, leading to an increased production of the HER2 protein (Hussain et al., 2020; Iqbal and Iqbal, 2014). HER2-positive breast cancer is an important target in breast cancer treatment because the overexpression of HER2 is associated with more aggressive tumor growth and a poorer prognosis (Iqbal and Iqbal, 2014). Targeting HER2 can help slow down the progression of the cancer and improve treatment outcomes. In molecular docking studies, the HER2 (human epidermal growth factor receptor 2) protein is commonly used as a target protein, especially when investigating the binding of potential drug compounds or ligands (Iqbal and Iqbal, 2014; Pegram and Jackisch, 2023; Sohrab, 2022). HER2 is a protein that plays a role in regulating cell growth and division (Iqbal and Iqbal, 2014). In some breast cancers, there is an overexpression or amplification of the HER2 gene, leading to an increased production of the HER2 protein (Iqbal and Iqbal, 2014). HER2- positive breast cancer is an important target in breast cancer treatment because the overexpression of HER2 is associated with more aggressive tumor growth and a poorer prognosis. Targeting HER2 can help slow down the progression of the cancer and improve treatment outcomes. In molecular docking studies, the HER2 (human epidermal growth factor receptor 2) protein is commonly used as a target protein, especially when investigating the binding of potential drug compounds or ligands (Sohrab, 2022). These therapies aim to be more effective and cause fewer side effects compared to traditional chemotherapy. Local Nigerian floras, also known as plants or plant species, have been studied for their potential roles in traditional medicine and complementary treatments, including the treatment of breast cancer. Some of these plants are believed to contain bioactive compounds with medicinal properties that could contribute to breast cancer treatment. However, it is important to note that while traditional remedies and plant-based compounds may show promise, they often need rigorous scientific validation before being recommended as standard treatments. Nigerian plant species that have been investigated for their potential roles in breast cancer treatment include; Annona muricata (Soursop or Graviola), Carica papaya (Papaya), Curcuma longa (Turmeric), Allium sativum (Garlic) and Azadirachta indica (Neem) (Ohiagu et al., 2021). It's important to emphasize that while these plants show potential, further research is needed to better understand their mechanisms of action, optimal dosages, and potential interactions with conventional breast cancer treatments. Scientific validation through preclinical and clinical studies is crucial before any plant-based remedies can be recommended for breast cancer treatment. Other Nigerian medicinal plants with great pharmacological and ethnobotanical properties include; Bryophyllum pinnatum (BP), Cassia sieberiana (CS), Cassia (CT) Tora and Tamarindus Indica (TI) (Archer et al., 2019; Meena and Niranjan, 2010; Pawar et al., 2011; Sarwa et al., 2014; Sookying and Duangjai, n.d.) (Fig. 1). These plants demonstrated plausible properties such as phytochemical, ethnobotanical, pharmacological and biological properties (Archer et al., 2019; Faboro et al., 2016; Khan and Odokpe, 2020; Meena and Niranjan, 2010; Ms and Ali, 2018; Salami et al., 2013; Sarwa et al., 2014; Sookying and Duangjai, n.d.). This study utilizes the potentials of BP, CB, CT and TI in the inhibition study of one of the breast cancer target proteins, HER2 through Insilco studies.

Reference

Abdallah MS, Muhammad A.  2018. Antibacterial activity of leaves and fruits extract of Tamarindus indica against clinical isolates of Escherichia coli and Shigella. J Anal Pharm Res. 7(5), 606-609. DOI: 10.15406/japlr.2018.07.00290.

Archer M, Asafo T, Oteng S, Atta P. 2019. Medicinal Uses of Cassia sieberiana ; A Review International Journal of Sciences : Medicinal Uses of Cassia sieberiana ; A Review. International Journal of Sciences Basic and Applied Research (IJSBAR) 48(2), 161-180.

Burguin A, Diorio C. 2021. Breast Cancer Treatments : Updates and New Challenges. J. Pers. Med. 11(8), 808. https://doi.org/10.3390/jpm11080808.

Dashti S, Taheri  M,  Fard SG. 2020. An in ‑ silico method leads to recognition of hub genes and crucial pathways in survival of patients with breast cancer. Scientific Reports, 1–13. https://doi.org/10.1038/s41598-020-76024-2.

Faboro OE, Wei L, Liang S,   McDonald GA, Obafemi CA. 2016. Phytochemical Analyzes from the Leaves of Bryophyllum pinnatum. European Journal of Medicinal Plants 14(3), 1–10. https://doi.org/10.9734/EJMP/2016/26156.

Farhat  A, Ben  H, Khemakhem B, Ben Y,  Michaud P. 2022. Apigenin analogues as SARS-CoV-2 main protease inhibitors : In-silico screening approach. Bioengineered 13(2), 3350–3361. https://doi.org/10.1080/21655979.2022.2027181.

Herrera-calderon O, Yepes-p AF,  Quintero-saumeth  J, Rojas-armas JP, Palomino-pacheco M, Ortiz-s M, Peña-rojas G. 2020. Carvacrol : An In Silico Approach of a Candidate Drug on HER2 , PI3K α , mTOR , hER- α , PR , and EGFR Receptors in the Breast Cancer. Hindawi Evidence-Based Complementary and Alternative Medicine, 1-12. https://doi.org/10.1155/2020/8830665.

Hussain K, Sait W, Mashraqi M, Khogeer AA,  Alzahrani  O, Anfinan NM, Alam Q. 2020. Molecular docking analysis of HER-2 inhibitor from the ZINC database as anticancer agents. Bioinformation 16(11), 882–887. https://doi.org/10.6026/97320630016882.

Iqbal N, Iqbal N. 2014. Human Epidermal Growth Factor Receptor 2 (HER2) in Cancers: Overexpression and Therapeutic Implications. Mol Biol Int. 2014, 852748. https://doi: 10.1155/2014/852748.

Khan ME, Odokpe AU. 2020. Isolation and characterization of stigmasterol and  β- sitosterol from Cassia sieberiana (Fabaceae) leaf extract. J. Chem Soc. Nigeri 45(1), 135–142.

Kim J. 2021. In silico analysis of differentially expressed genesets in metastatic breast cancer identifies potential prognostic biomarkers. World J. Surg. Onc. 19, 188. https://doi.org/10.1186/s12957-021-02301-7

Meena AK,  Niranjan US. 2010. Cassia tora Linn : A review on its ethnobotany, phytochemical and pharmacological profile. Journal of Pharmacy Research 3(3).

Moo T, Sanford R, Dang C, Morrow M, Sloan M, Cancer K. 2021.  Design and Development of CARP – 1 – NEMO Binding Inhibitors for Breast Cancer. HHS Public Access 13(3), 339–354. https://doi.org/10.1016/j.cpet.2018.02.006.

Muhammad AJ, Muhammad M, Yunusa A, Mikail TA, Dalhatu MM, Habib IY, Sarki SI, Gwarzo MS, Muhammad NA, Mustapha RA. 2022. Determination of Antioxidant and α–Amylase Inhibition Properties of Alligator Pepper (Aframomum melegueta): A Potential Therapeutic Against Diabetes Mellitus. EAS J. Pharm Pharmacol. 4(3), 43 – 49. DOI: 10.36349/easjpp.2022.v04i03.001.

Muhammad M, Habib IY, Yunusa A, Mikail TA,  Alhassan AJ. 2023. Identification of potential SARS-CoV-2 papain-like protease inhibitors with the ability to interact with the catalytic triad, 10 (October 2022), 50–66. https://doi.org/10.3934/biophy.2023005.

Ogidigo J, Anosike CA, Fred O, Nwodo C, Omotuyi OI. 2018. In-silico molecular docking and pharmacokinetic studies of some selected phyto-constituents of Bryophyllum pinnatum as a potential selective inhibitor of monoamine oxidase–B (MAO-B). Pharmacologyonline 273, 272-285.

Ohiagu FO, Chikezie PC, Chikezie CM,  Enyoh CE. 2021. Anticancer activity of Nigerian medicinal plants. Future Journal of Pharmaceutical Sciences, 2-21. https://doi.org/10.1186/s43094-021-00222-6.

Pawar HA,  D’mello PM. 2011. Cassia tora Linn.: An Overview. International Journal of Pharmaceutical Sciences and Research 2(9), 2286–2291. http://dx.doi.org/10.13040/IJPSR.

Pegram M, Jackisch C, Johnston SRD. 2023. Estrogen/HER2 receptor crosstalk in breast cancer: combination therapies to improve outcomes for patients with hormone receptor-positive/HER2-positive breast cancer. npj Breast Cancer 9, 45 (2023). https://doi.org/10.1038/s41523-023-00533-2.

Rahman  PA, Fahmi M, Syaban R, Anoraga SG,  Sabila  FL. 2022. Molecular Docking Analysis from Bryophyllum Compound as A COVID-19 Cytokine Storm. Therap Journal of Medical Sciences 10(B), 779-784. https://doi.org/10.3889/oamjms.2022.8412.

Salami EO, Ozolua RI, Okpo SO, Eze GI, Uwaya DO. 2013. Studies on the anti – asthmatic and antitussive properties of aqueous leaf extract of Bryophyllum pinnatum in rodent species. Asian Pacific Journal of Tropical Medicine 6(6), 421–425. https://doi.org/10.1016/S1995-7645(13)60067-X.

Sarwa KK, Girls G, Raipur P, Rudrapal M, Debnath M, Bharat M, Verma VK. 2014. Phytochemical and Biological Potential of Cassia tora Linn Phytochemical and Biological Potential of Cassia tora Linn. European Journal of Medicinal Plants 8(2014), 1 – 18. https://doi.org/10.9734/EJMP/2014/8549.

Sohrab SS. 2022. Screening Docking and Molecular Dynamics Study of Natural Compounds as an Anti-HER2 for the Management of Breast Cancer. Life 12(11), 1729. https://doi.org/10.3390/life12111729.

Sookying S, Duangjai A, Saokaew S, Phisalprapa P. 2022. Botanical aspects, phytochemicals, and toxicity of Tamarindus indica leaf and a systematic review of antioxidant capacities of T. indica leaf extracts. Front. Nutr. 9, 977015. DOI: 10.3389/fnut.2022.977015.

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Source In silico inhibition study of phytocompounds derived from Bryophyllum pinnatum, Cassia sieberiana, Cassia tora and Tamarindus indica against breast cancer proteins  

Biophysical Factors Affecting Height and Diameter Structures of Falcata (Falcataria falcata) in Agusan del Norte, Philippines | InformativeBD

Biophysical factors influencing the Height and Diameter structures of Falcata (Falcataria falcata (L.) Greuter & R. Rankin) in Agusan del Norte, Philippines

Cornelio S. Casilac Jr., and Adrian M. Tulod, from the different institute of the Philippines. wrote a research article about, Biophysical Factors Affecting Height and Diameter Structures of Falcata (Falcataria falcata) in Agusan del Norte, Philippines. Entitled, Biophysical factors influencing the Height and Diameter structures of Falcata (Falcataria falcata (L.) Greuter & R. Rankin) in Agusan del Norte, Philippines. This research paper published by the International Journal of Biosciences (IJB). an open access scholarly research journal on Biosciences. under the affiliation of the International Network For Natural Sciences | INNSpub. an open access multidisciplinary research journal publisher.

Abstract

This study aims to support private tree farmers in making knowledgeable management decisions in their falcata plantation. The effect of biophysical factors on the height and diameter structures of 6-year-old Falcata (Falcataria falcata) at various elevations (0-200 m asl, 201-400 m asl, and 401-600 m asl) in Agusan was investigated in this study. Fifteen (15) 20 m x 20 m plots were created at each sampling site a total of 45 plots were established. In this study, the height and diameter structures of 6-year-old falcata were measured and analyzed. Results indicate that elevation, temperature, relative humidity, and soil potassium are key factors influencing the height and diameter structures of 6-year-old falcata trees. The mean height and diameter were highest in the middle elevation, or within 201-400 m asl, and lowest in the higher elevation, or 401-600 m asl. The temperature has a negative and significant relationship with the height and diameter structures of 6-year-old falcata, and tree spacing had a negative relationship with height.

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Read more Effects of Two Propagation Methods on Growth and Seed Yield of Jatropha curcas (L.) inTandjilé Region, Chad | InformativeBD

Introduction

Falcataria falcata (L.) Greuter & R. Rankin) is a huge tree with a first branch reaching a height of up to 20 meters. Falcata trees can reach 100 cm in diameter, have a spreading flat crown, and form a wide umbrella-shaped canopy when growing in the open, with the buttress being tiny or absent (Krisnawati et al., 2011). Tree growth patterns in forest stands vary between locations and individual trees due to both internal and external variables. Environmental variables vary concerning elevation within a species geographical range, resulting in regional diversity in site conditions that may limit growth (Barry, 1992). A higher growth rate boosts a species competitive ability and survival in favorable conditions (Vitasse, 2009).

The elevational gradient plays an important role in a tree or stands growth since trees have different ecological and physiological requirements for survival. Understanding how tree growth responds to environmental gradients is crucial for comprehending the ecology of species distribution and forest ecosystems, as well as for predicting future ecosystem services, as stated by Rapp et al. (2012). The growth and mortality rates of trees can be influenced by the elevation, as each species has an optimal altitude level for planting suitability. Some authors suggest that tree growth may decline with elevation (Coomes and Allen, 2007; Leigh, 1975; Bruijnzeel and Veneklaas, 1998; Girardin et al., 2010)

Pathogens (Mallett and Volney, 1999), insects (Rhoades and Stipes, 1999), competition with other trees (Nowak and McBride, 1991; Rhoades and Stipes, 1999), and competition with other vegetation are all biotic variables linked to lower tree growth rates in ecosystems (Close et al., 1996). Gall rust appears to be more common in falcata species at higher elevations. Anino (1991) emphasizes that minor infections occur at lower elevations of 250 meters above sea level, while major infections occur at elevations of 275 to 500 meters above sea level. Severe instances were discovered at elevations ranging from 400 to 600 meters above sea level (Lacandula et al., 2017).

There is a need to investigate the influence of biophysical factors on the height and diameter structures of the falcata at different elevation because the knowledge of how this plant responds are of paramount significance in understanding its ability to respond to climate change. In the Philippines, falcata is one of the most important species for industrial tree plantations (ITPs). Despite the importance of the species, there is no empirical data about its height and diameter structures concerning different elevations.

The study hypothesized that the height and diameter structures of 6-year-old falcata will decline with elevation. More specifically, the hypothesis suggests that the height and diameter structures of the species will reduce at higher elevations due to their vulnerability under such conditions.

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Source : Biophysical factors influencing the Height and Diameter structures of Falcata (Falcataria falcata (L.) Greuter & R. Rankin) in Agusan del Norte, Philippines